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Department of Systems Biology and Translational Medicine

Cardiovascular Research Institute

Cardiovascular Forum

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StarNet Examples

We provide on this page a few examples of StarNet analyses
For each of them we include a screenshot of the submission page, and links to the results pages. Links to HeatSeeker results are provided, as appropriate.

  1. This analysis is of the cardiac developmental gene, Hand1, comparing the full human cohort to the human developmental cohort.
    The submission page looks like:


    StarNet Results
    HeatSeeker Results
  2. Next we compare the expression of Hand1 in the full human and mouse cohorts.


    StarNet Results
    HeatSeeker Results

  3. We give an example of a network drawn with only one cohort.


    StarNet Results

  4. This example compares expression of Gata4, another developmental gene, in the full human and Drosophila cohorts.


    StarNet Results
    HeatSeeker Results

  5. Finally, we give an example of an anlysis which does not use the default settings..
    These are the basic settings:

    And the advanced settings:


    StarNet Results


 

Go to StarNet
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Documentation:
User manual

Gene Lookup:
Gene Lookup

Please cite:
Jupiter, D.C. and VanBuren, V. A Visual Data Mining Tool that Faciltates Reconstruction of Transcription Regulatory Networks. PLoS ONE 3(3): e1717 doi:10.1371/journal.pone.0001717 [PDF] [Link to StarNet]

Data sets used in starnet:
Species
GSE descriptions
.cel files used

Sample Analyses: