StarNet Wiki

If you encounter any program bugs or have suggestions to improve StarNet, please send us an email: Vincent VanBuren's email .

2.07: Web analytics for StarNet, Cognoscente, and the rest of the VanBuren Lab website are now computed with Piwik (http://piwik.org/). (8/1/12, VV)

2.06: Computed correlation data sets are now available for download for mouse, human, and rat. Download page: http://vanburenlab.medicine.tamhsc.edu/correlation_download.html Others data sets will be made available as we receive requests. (7/22/12, VV)

2.05: Redirection fixed so the 'Job Queued' page comes up immediately on query submission. (3/23/10, VV)

2.04: Bug fix for node color-coding by level for alternate color schemes. (3/15/10, VV)

2.03: Bonferroni corrected p-values were previously reported correctly, but stars '*' were not assigned to GO terms correctly. Stars should be assigned to terms when there are multiple genes annotated with that term and the term has a computed p-value that passes the Bonferroni threshold for significance (at Bonferroni p=0.05). The Bonferroni p-value was not being computed correctly for this purpose, and the result was that too many terms were starred. This is corrected. (10/19/09, VV)

2.02: Removed borders on scale bars for negative correlations; the previous fix only worked for positive correlations. (10/16/09, VV)

2.01: Concentrated multiple edges between two genes in the known interaction networks into a single edge. Made edges come closer to the node name in known interaction graphs to condense the graph and to make it clearer where each edge terminates. Fixed result pages so 'HOME' links to StarNet2 rather than the original StarNet. Made nodes in correlation network a fixed size and smaller. Making graphs more condensed improves the speed of arriving at a result and improves the overall appearance of the graphs. Removed borders from scale bars and made them smaller. Created Version History wiki. (10/15/09, VV)

Version 2: Added coverage for 9 new species. Added new HeatSeeker module for comparing selected networks. Made improvements to formatting of interface and results. Made improvements to the response time. Supersedes Version 1. Starnet 2 website: http://vanburenlab.medicine.tamhsc.edu/starnet2.html (10/12/09)

Version 1: Coverage for mouse only; no HeatSeeker. Version 1 is currently static and has been superseded by Version 2. The website will be maintained as a historical reference: http://vanburenlab.medicine.tamhsc.edu/starnet.html (7/20/07)